mcsim/configure
mcsim/configure.in
mcsim/COPYING
mcsim/doc/About-Datasets.txt
mcsim/doc/About-Doc.txt
mcsim/doc/About-MCSim.txt
mcsim/doc/Makefile.in
mcsim/doc/Manual-Update.txt
mcsim/doc/MCSim-changelog
mcsim/doc/MCSim-to-do
mcsim/doc/mcsim.html
mcsim/doc/mcsim.pdf
mcsim/doc/mcsim.ps
mcsim/doc/mcsim.texinfo
mcsim/doc/Programming-notes.txt
mcsim/doc
mcsim/install-sh
mcsim/Makefile.in
mcsim/mod/getopt.c
mcsim/mod/getopt.h
mcsim/mod/hungtype.h
mcsim/mod/lex.c
mcsim/mod/lex.h
mcsim/mod/lexerr.c
mcsim/mod/lexerr.h
mcsim/mod/lexfn.c
mcsim/mod/lexfn.h
mcsim/mod/Makefile.in
mcsim/mod/mod.c
mcsim/mod/mod.h
mcsim/mod/modd.c
mcsim/mod/modd.h
mcsim/mod/modi.c
mcsim/mod/modi.h
mcsim/mod/modiface.h
mcsim/mod/modiSBML.c
mcsim/mod/modiSBML.h
mcsim/mod/modo.c
mcsim/mod/modo.h
mcsim/mod/strutil.c
mcsim/mod/strutil.h
mcsim/mod
mcsim/README
mcsim/samples/1cpt/1cpt.MCMC1.in
mcsim/samples/1cpt/1cpt.MCMC1.out
mcsim/samples/1cpt/1cpt.MCMC2.in
mcsim/samples/1cpt/1cpt.MCMC2.out
mcsim/samples/1cpt/1cpt.MCMC3.in
mcsim/samples/1cpt/1cpt.MCMC3.out
mcsim/samples/1cpt/1cpt.MCMC4.in
mcsim/samples/1cpt/1cpt.MCMC4.out
mcsim/samples/1cpt/1cpt.MCMC5.in
mcsim/samples/1cpt/1cpt.MCMC5.out
mcsim/samples/1cpt/1cpt.model
mcsim/samples/1cpt/1cpt_no_noise.in
mcsim/samples/1cpt/1cpt_no_noise.out
mcsim/samples/1cpt/1cpt_w._noise.in
mcsim/samples/1cpt/1cpt_w._noise.out
mcsim/samples/1cpt/Makefile.in
mcsim/samples/1cpt
mcsim/samples/binomial/binomial.fit.in
mcsim/samples/binomial/binomial.fit.out
mcsim/samples/binomial/binomial.MCMC.in
mcsim/samples/binomial/binomial.MCMC.out
mcsim/samples/binomial/binomial.model
mcsim/samples/binomial
mcsim/samples/discrete/discrete.in
mcsim/samples/discrete/discrete.model
mcsim/samples/discrete/discrete.out
mcsim/samples/discrete
mcsim/samples/err_in_var/err_in_var.in
mcsim/samples/err_in_var/err_in_var.model
mcsim/samples/err_in_var/err_in_var.out
mcsim/samples/err_in_var
mcsim/samples/linear/linear.H.MCMC1.in
mcsim/samples/linear/linear.H.MCMC1.out
mcsim/samples/linear/linear.H.MCMC2.in
mcsim/samples/linear/linear.H.MCMC2.out
mcsim/samples/linear/linear.H.MCMC3.in
mcsim/samples/linear/linear.H.MCMC3.out
mcsim/samples/linear/linear.H.MCMC3.rst
mcsim/samples/linear/linear.H.MCMC4.in
mcsim/samples/linear/linear.H.MCMC4.out
mcsim/samples/linear/linear.H.MCMC4.rst
mcsim/samples/linear/linear.hier.mtc.in
mcsim/samples/linear/linear.hier.mtc.out
mcsim/samples/linear/linear.in
mcsim/samples/linear/linear.MCMC1.in
mcsim/samples/linear/linear.MCMC1.out
mcsim/samples/linear/linear.MCMC2.in
mcsim/samples/linear/linear.MCMC2.out
mcsim/samples/linear/linear.MCMC3.data
mcsim/samples/linear/linear.MCMC3.in
mcsim/samples/linear/linear.MCMC3.out
mcsim/samples/linear/linear.model
mcsim/samples/linear/linear.out
mcsim/samples/linear
mcsim/samples/multistage/multistage.model
mcsim/samples/multistage
mcsim/samples/optimal_design/butadiene.model
mcsim/samples/optimal_design/butadiene.opt.in
mcsim/samples/optimal_design/butadiene.opt.out
mcsim/samples/optimal_design/butadiene.pop.sample
mcsim/samples/optimal_design
mcsim/samples/oscillators/oscillators.in
mcsim/samples/oscillators/oscillators.model
mcsim/samples/oscillators/oscillators.out
mcsim/samples/oscillators
mcsim/samples/PBPK_base/pbpk_man.model
mcsim/samples/PBPK_base/pbpk_pregnant.model
mcsim/samples/PBPK_base/pbpk_woman.model
mcsim/samples/PBPK_base
mcsim/samples/pde1/pde1.in
mcsim/samples/pde1/pde1.model
mcsim/samples/pde1/pde1.out
mcsim/samples/pde1
mcsim/samples/pde2/pde2.in
mcsim/samples/pde2/pde2.model
mcsim/samples/pde2/pde2.out
mcsim/samples/pde2
mcsim/samples/perc/Makefile.in
mcsim/samples/perc/perc.lsodes.in
mcsim/samples/perc/perc.lsodes.out
mcsim/samples/perc/perc.model
mcsim/samples/perc/perc.mtc.in
mcsim/samples/perc/perc.mtc.out
mcsim/samples/perc/perc.ndoses.in
mcsim/samples/perc/perc.ndoses.out
mcsim/samples/perc/perc.setpoint.dat
mcsim/samples/perc/perc.setpoint.in
mcsim/samples/perc/perc.setpoint.out
mcsim/samples/perc/ref_model.c
mcsim/samples/perc
mcsim/samples/probit/probit.in
mcsim/samples/probit/probit.model
mcsim/samples/probit/probit.out
mcsim/samples/probit
mcsim/samples/random_numbers/random.in
mcsim/samples/random_numbers/random.model
mcsim/samples/random_numbers/random.out
mcsim/samples/random_numbers
mcsim/samples/SBML/2cpt.model
mcsim/samples/SBML/C_central.xml
mcsim/samples/SBML/C_periph.xml
mcsim/samples/SBML/SBML_List.in
mcsim/samples/SBML
mcsim/samples
mcsim/sim/getopt.c
mcsim/sim/getopt.h
mcsim/sim/hungtype.h
mcsim/sim/lex.c
mcsim/sim/lex.h
mcsim/sim/lexerr.c
mcsim/sim/lexerr.h
mcsim/sim/lexfn.c
mcsim/sim/lexfn.h
mcsim/sim/list.c
mcsim/sim/list.h
mcsim/sim/lsodes.h
mcsim/sim/lsodes1.c
mcsim/sim/lsodes2.c
mcsim/sim/Makefile.in
mcsim/sim/makemcsim
mcsim/sim/makemcsimd
mcsim/sim/makemcsims
mcsim/sim/matutil.c
mcsim/sim/matutil.h
mcsim/sim/matutilo.c
mcsim/sim/matutilo.h
mcsim/sim/mh.c
mcsim/sim/mh.h
mcsim/sim/modelu.c
mcsim/sim/modelu.h
mcsim/sim/modiface.h
mcsim/sim/optdsign.c
mcsim/sim/optdsign.h
mcsim/sim/random.c
mcsim/sim/random.h
mcsim/sim/sim.c
mcsim/sim/sim.h
mcsim/sim/simi.c
mcsim/sim/simi.h
mcsim/sim/siminit.c
mcsim/sim/siminit.h
mcsim/sim/simmonte.c
mcsi