GPU-HMMER-0.92/
GPU-HMMER-0.92/Makefile.in
GPU-HMMER-0.92/INSTALL
GPU-HMMER-0.92/COPYRIGHT
GPU-HMMER-0.92/config.sub
GPU-HMMER-0.92/NOTES
GPU-HMMER-0.92/install-sh
GPU-HMMER-0.92/squid/
GPU-HMMER-0.92/squid/alignio.c
GPU-HMMER-0.92/squid/Makefile.in
GPU-HMMER-0.92/squid/stack.c
GPU-HMMER-0.92/squid/sindex_main.c
GPU-HMMER-0.92/squid/dayhoff.c
GPU-HMMER-0.92/squid/rk.h
GPU-HMMER-0.92/squid/sre_random.c
GPU-HMMER-0.92/squid/weight.c
GPU-HMMER-0.92/squid/seqstat_main.c
GPU-HMMER-0.92/squid/sqfuncs.h
GPU-HMMER-0.92/squid/translate_main.c
GPU-HMMER-0.92/squid/compalign_main.c
GPU-HMMER-0.92/squid/msf.c
GPU-HMMER-0.92/squid/config.sub
GPU-HMMER-0.92/squid/sfetch_main.c
GPU-HMMER-0.92/squid/sreformat_main.c
GPU-HMMER-0.92/squid/gki.h
GPU-HMMER-0.92/squid/shuffle_main.c
GPU-HMMER-0.92/squid/gsi.c
GPU-HMMER-0.92/squid/stopwatch.c
GPU-HMMER-0.92/squid/ssi.h
GPU-HMMER-0.92/squid/install-sh
GPU-HMMER-0.92/squid/stopwatch.h
GPU-HMMER-0.92/squid/gki.c
GPU-HMMER-0.92/squid/seqsplit_main.c
GPU-HMMER-0.92/squid/seqencode.c
GPU-HMMER-0.92/squid/clustal.c
GPU-HMMER-0.92/squid/vectorops.h
GPU-HMMER-0.92/squid/a2m.c
GPU-HMMER-0.92/squid/sqio.c
GPU-HMMER-0.92/squid/afetch_main.c
GPU-HMMER-0.92/squid/compstruct_main.c
GPU-HMMER-0.92/squid/gsi64.h
GPU-HMMER-0.92/squid/getopt.c
GPU-HMMER-0.92/squid/revcomp.c
GPU-HMMER-0.92/squid/00README
GPU-HMMER-0.92/squid/translate.c
GPU-HMMER-0.92/squid/sre_random.h
GPU-HMMER-0.92/squid/alistat_main.c
GPU-HMMER-0.92/squid/vectorops.c
GPU-HMMER-0.92/squid/cluster.c
GPU-HMMER-0.92/squid/revcomp_main.c
GPU-HMMER-0.92/squid/msa.h
GPU-HMMER-0.92/squid/weight_main.c
GPU-HMMER-0.92/squid/ssi.c
GPU-HMMER-0.92/squid/selex.c
GPU-HMMER-0.92/squid/stockholm.c
GPU-HMMER-0.92/squid/aligneval.c
GPU-HMMER-0.92/squid/test_main.c
GPU-HMMER-0.92/squid/squidconf.h.in
GPU-HMMER-0.92/squid/gsi.h
GPU-HMMER-0.92/squid/msa.c
GPU-HMMER-0.92/squid/hsregex.c
GPU-HMMER-0.92/squid/configure
GPU-HMMER-0.92/squid/squidcore.c
GPU-HMMER-0.92/squid/sqerror.c
GPU-HMMER-0.92/squid/squid.h.in
GPU-HMMER-0.92/squid/shuffle.c
GPU-HMMER-0.92/squid/Testsuite/
GPU-HMMER-0.92/squid/Testsuite/iospeed_main.c
GPU-HMMER-0.92/squid/Testsuite/Makefile.in
GPU-HMMER-0.92/squid/Testsuite/x-base-sreformat
GPU-HMMER-0.92/squid/Testsuite/bug-1-sfetch-paths
GPU-HMMER-0.92/squid/Testsuite/x-base-seqstat
GPU-HMMER-0.92/squid/Testsuite/testsuite.pm
GPU-HMMER-0.92/squid/Testsuite/x-base-afetch
GPU-HMMER-0.92/squid/Testsuite/x-base-sindex
GPU-HMMER-0.92/squid/Testsuite/00README
GPU-HMMER-0.92/squid/Testsuite/x-base-shuffle
GPU-HMMER-0.92/squid/Testsuite/sqdconfig_main.c
GPU-HMMER-0.92/squid/Testsuite/rndspeed_main.c
GPU-HMMER-0.92/squid/Testsuite/x-base-sfetch
GPU-HMMER-0.92/squid/Testsuite/x-base-alistat
GPU-HMMER-0.92/squid/types.c
GPU-HMMER-0.92/squid/phylip.c
GPU-HMMER-0.92/squid/rk.c
GPU-HMMER-0.92/squid/sre_string.c
GPU-HMMER-0.92/squid/iupac.c
GPU-HMMER-0.92/squid/sre_ctype.c
GPU-HMMER-0.92/squid/file.c
GPU-HMMER-0.92/squid/gsi64.c
GPU-HMMER-0.92/squid/sf
GPU-HMMER-0.92/squid/eps.c
GPU-HMMER-0.92/squid/lastidx
GPU-HMMER-0.92/squid/stockholm.h
GPU-HMMER-0.92/squid/sre_math.c
GPU-HMMER-0.92/00README
GPU-HMMER-0.92/config.guess
GPU-HMMER-0.92/configure
GPU-HMMER-0.92/tutorial/
GPU-HMMER-0.92/tutorial/amino.null
GPU-HMMER-0.92/tutorial/globins50.msf
GPU-HMMER-0.92/tutorial/rrm.sto
GPU-HMMER-0.92/tutorial/nucleic.null
GPU-HMMER-0.92/tutorial/7LES_DROME
GPU-HMMER-0.92/tutorial/RU1A_HUMAN
GPU-HMMER-0.92/tutorial/amino.pri
GPU-HMMER-0.92/tutorial/rrm.hmm
GPU-HMMER-0.92/tutorial/pkinase.sto
GPU-HMMER-0.92/tutorial/globins630.fa
GPU-HMMER-0.92/tutorial/nucleic.pri
GPU-HMMER-0.92/tutorial/fn3.sto
GPU-HMMER-0.92/tutorial/Artemia.fa
GPU-HMMER-0.92/src/
GPU-HMMER-0.92/src/hmmpfam.c
GPU-HMMER-0.92/src/hmmsearch-pvm.c
GPU-HMMER-0.92/src/alphabet.c
GPU-HMMER-0.92/src/modelmakers.c
GPU-HMMER-0.92/src/Makefile.in
GPU-HMMER-0.92/src/hmmalign.c
GPU-HMMER-0.92/src/states.c
GPU-HMMER-0.92/src/hmmfetch.c
GPU-HMMER-0.92/src/hmmpostal.c
GPU-HMMER-0.92/src/hmmsearch.c
GPU-HMMER-0.92/src/hmmcalibrate-pvm.c
GPU-HMMER-0.92/src/plan7.c
GPU-HMMER-0.92/src/hmmbuild.c
GPU-HMMER-0.92/src/emit.c
GPU-HMMER-0.92/src/trace.c
GPU-HMMER-0.92/src/hmmpfam-pvm.c
GPU-HMMER-0.92/src/threads.c
GPU-HMMER-0.92/src/histogram.c
GPU-HMMER-0.92/src/hmmsort.cpp
GPU-HMMER-0.92/src/config.h.in
GPU-HMMER-0.92/src/hmmemit.c
GPU-HMMER-0.92/src/cuda_hmmsearch.c
GPU-HMMER-0.92/src/globals.h
GPU-HMMER-0.92/src/funcs.h
GPU-HMMER-0.92/src/weetest.c
GPU-HMMER-0.92/src/hmmindex.c
GPU-HMMER-0.92/src/display.c
GPU-HMMER-0.92/src/cuda_kernel.linkinfo
GPU-HMMER-0.92/src/compare.c
GPU-HMMER-0.92/src/mathsupport.c
GPU-HMMER-0.92/src/prior.c
GPU-HMMER-0.92/src/cuda_hmmsearch.h
GPU-HMMER-0.92/src/structs.h
GPU-HMMER-0.92/src/emulation.c
GPU-HMMER-0.92/src/cuda_kernel.cu
GPU-HMMER-0.92/src/config.h
GPU-HMMER-0.92/src/fast_algorithms.c
GPU-HMMER-0.92/src/plan9.c
GPU-HMMER-0.92/src/masks.c
GPU-HMMER-0.92/src/hmmio.c
GPU-HMMER-0.92/src/postprob.h
GPU-HMMER-0.92/src/misc.c
GPU-HMMER-0.92/src/camJul97.c
GPU-HMMER-0.92/src/hmmconvert.c
GPU-HMMER-0.92/src/core_algorithms.c
GPU-HMMER-0.92/src/hmmcalibrate.c
GPU-HMMER-0.92/src/postprob.c
GPU-HMMER-0