ghmm-0.9-rc3/ghmm/discrime.h
ghmm-0.9-rc3/ghmm/unsupported.h
ghmm-0.9-rc3/ghmm/gradescent.c
ghmm-0.9-rc3/ghmm/sfoba.h
ghmm-0.9-rc3/tests/Makefile.in
ghmm-0.9-rc3/configure
ghmm-0.9-rc3/ghmm/sdfoba.h
ghmm-0.9-rc3/ghmm/viterbi.h
ghmm-0.9-rc3/ghmm/discrime.c
ghmm-0.9-rc3/acinclude.m4
ghmm-0.9-rc3/ghmm/smap_classify.h
ghmm-0.9-rc3/ghmm/linkedlist.c
ghmm-0.9-rc3/ghmmwrapper/wrapper_dmodel.i
ghmm-0.9-rc3/ghmm/scanner.h
ghmm-0.9-rc3/ghmm/sfoba.c
ghmm-0.9-rc3/tools/scluster.c
ghmm-0.9-rc3/ghmm/gauss_tail.c
ghmm-0.9-rc3/ghmm/sdfoba.c
ghmm-0.9-rc3/ghmmwrapper/testdata/discrete.xml
ghmm-0.9-rc3/tests/Makefile.am
ghmm-0.9-rc3/tests/two_states_three_symbols.c
ghmm-0.9-rc3/ghmm/scanner.c
ghmm-0.9-rc3/ghmm/viterbi.c
ghmm-0.9-rc3/NEWS
ghmm-0.9-rc3/ghmmwrapper/ghmmwrapper.i
ghmm-0.9-rc3/ghmm/smap_classify.c
ghmm-0.9-rc3/HMMEd/
ghmm-0.9-rc3/Makefile.in
ghmm-0.9-rc3/config.h.in
ghmm-0.9-rc3/ghmm/rng.h
ghmm-0.9-rc3/install-sh
ghmm-0.9-rc3/HMMEd/HMMEd
ghmm-0.9-rc3/ghmm/rng.c
ghmm-0.9-rc3/ghmm/ghmm.h
ghmm-0.9-rc3/HMMEd/Makefile.in
ghmm-0.9-rc3/ghmmwrapper/wrapper_arrays.i
ghmm-0.9-rc3/ghmmwrapper/gql.c
ghmm-0.9-rc3/ghmm/vector.c
ghmm-0.9-rc3/ghmmwrapper/class_change.py
ghmm-0.9-rc3/Makefile.am
ghmm-0.9-rc3/missing
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ghmm-0.9-rc3/HMMEd/Makefile.am
ghmm-0.9-rc3/configure.in
ghmm-0.9-rc3/tools/Makefile.in
ghmm-0.9-rc3/ghmmwrapper/sdclass_change.h
ghmm-0.9-rc3/ToDo
ghmm-0.9-rc3/ghmmwrapper/testdata/multexon-4.xml
ghmm-0.9-rc3/ghmmwrapper/sdclass_change.c
ghmm-0.9-rc3/doc/xml_switching-example.xml
ghmm-0.9-rc3/tools/smix_hmm.c
ghmm-0.9-rc3/tools/Makefile.am
ghmm-0.9-rc3/HMMEd/HMMEditingContext.py
ghmm-0.9-rc3/tests/
ghmm-0.9-rc3/ghmmwrapper/wrapper_cseq.i
ghmm-0.9-rc3/ghmm/kbest.h
ghmm-0.9-rc3/ghmm/sviterbi.h
ghmm-0.9-rc3/ghmm/sequence.h
ghmm-0.9-rc3/ghmm/pmodel.h
ghmm-0.9-rc3/ghmm/sdmodel.h
ghmm-0.9-rc3/tests/root_finder_test.c
ghmm-0.9-rc3/ghmm/obsolete.h
ghmm-0.9-rc3/ghmmwrapper/setup.py
ghmm-0.9-rc3/ghmm/pmodel.c
ghmm-0.9-rc3/ghmmwrapper/wrapper_alphabet.i
ghmm-0.9-rc3/ghmm/randvar.h
ghmm-0.9-rc3/ghmm/randvar.c
ghmm-0.9-rc3/ghmm/pviterbi.h
ghmm-0.9-rc3/ghmmwrapper/Makefile.in
ghmm-0.9-rc3/ghmm/cfbgibbs.h
ghmm-0.9-rc3/ghmm/kbest.c
ghmm-0.9-rc3/ghmm/sequence.c
ghmm-0.9-rc3/LGPL.txt
ghmm-0.9-rc3/ghmm/matrixop.h
ghmm-0.9-rc3/ghmm/sdmodel.c
ghmm-0.9-rc3/ghmmwrapper/
ghmm-0.9-rc3/ghmm/sviterbi.c
ghmm-0.9-rc3/ghmm/cfbgibbs.c
ghmm-0.9-rc3/COPYING
ghmm-0.9-rc3/ghmmwrapper/wrapper_dseq.i
ghmm-0.9-rc3/ghmm/matrixop.c
ghmm-0.9-rc3/ghmm/pviterbi.c
ghmm-0.9-rc3/ghmmwrapper/Makefile.am
ghmm-0.9-rc3/ghmm/mprintf.h
ghmm-0.9-rc3/tests/data/viterbi.sh
ghmm-0.9-rc3/autogen.sh
ghmm-0.9-rc3/HMMEd/EditingContext.py
ghmm-0.9-rc3/tests/randvar_test.c
ghmm-0.9-rc3/ghmm/mprintf.c
ghmm-0.9-rc3/HMMEd/setup.py
ghmm-0.9-rc3/ghmmwrapper/testdata/tiny.smo
ghmm-0.9-rc3/ghmmwrapper/INSTALL
ghmm-0.9-rc3/INSTALL
ghmm-0.9-rc3/ghmmwrapper/mixture.py
ghmm-0.9-rc3/doc/xml_example.xml
ghmm-0.9-rc3/doc/xml_mix_cont_example.xml
ghmm-0.9-rc3/ghmm/xmlwriter.h
ghmm-0.9-rc3/ghmmwrapper/ghmmunittests.py
ghmm-0.9-rc3/tests/chmm_test.c
ghmm-0.9-rc3/ghmm/Makefile.in
ghmm-0.9-rc3/ghmm/xmlwriter.c
ghmm-0.9-rc3/config.guess
ghmm-0.9-rc3/ghmm/mt19937ar.c
ghmm-0.9-rc3/tests/chmm.c
ghmm-0.9-rc3/GPL.txt
ghmm-0.9-rc3/ghmm/matrix.h
ghmm-0.9-rc3/ghmmwrapper/modhmmer.py
ghmm-0.9-rc3/version.m4
ghmm-0.9-rc3/ghmmwrapper/testdata/test10.sqd
ghmm-0.9-rc3/ghmm/foba.h
ghmm-0.9-rc3/tests/data/test10.sqd
ghmm-0.9-rc3/ghmm/matrix.c
ghmm-0.9-rc3/ghmm/Makefile.am
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ghmm-0.9-rc3/ghmm/mes.h
ghmm-0.9-rc3/ghmm/ghmmconfig.h.in
ghmm-0.9-rc3/ghmm/sreestimate.h
ghmm-0.9-rc3/ghmmwrapper/wrapper_dpseq.i
ghmm-0.9-rc3/ghmm/mes.c
ghmm-0.9-rc3/tools/cluster.c
ghmm-0.9-rc3/ghmm/sreestimate.c
ghmm-0.9-rc3/tests/libxml-test.c
ghmm-0.9-rc3/ghmm/model.h
ghmm-0.9-rc3/ghmm/sgenerate.h
ghmm-0.9-rc3/tests/test_gsl_ran_gaussian_tail.c
ghmm-0.9-rc3/tools/probdist.c
ghmm-0.9-rc3/AUTHORS
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ghmm-0.9-rc3/tests/sequences_test.c
ghmm-0.9-rc3/config.sub
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ghmm-0.9-rc3/ghmmwrapper/sclass_change.h
ghmm-0.9-rc3/doc/xml_data_structure.fig
ghmm-0.9-rc3/tests/label_higher_order_test.c
ghmm-0.9-rc3/ghmmwrapper/sclass_change.c
ghmm-0.9-rc3/tests/data/Makefile.in
ghmm-0.9-rc3/ghmm/scluster.h
ghmm-0.9-rc3/ghmm/ghmm_internals.h
ghmm-0.9-rc3/ghmm/modelutil.c
ghmm-0.9-rc3/ghmmwrapper/wrapper_cmodel.i
ghmm-0.9-rc3/ghmmwrapper/testdata/multiple_hmmer.hmm
ghmm-0.9-rc3/ghmmwrapper/wrapper_xmlfile.i
ghmm-0.9-rc3/ghmm/scluster.c
ghmm-0.9-rc3/ghmm/ghmm_internals.c
ghmm-0.9-rc3/tools/smo2xml.c
ghmm-0.9-rc3/doc/xml_cont_example.xml
ghmm-0.9-rc3/tests/sequences_old_format.c
ghmm-0.9-rc3/ghmm/xmlreader.h
ghmm-0.9-rc3/ghmm/cluster.h
ghmm-0.9-rc3/tests/data/test100.sqd
ghmm-0.9-rc3/ghmm/xmlreader.c
ghmm-0.9-rc3/README
ghmm-0.9-rc3/tests/data/Makefile.am
ghmm-0.9-rc3/ghmmwrapper/testdata/
ghmm-0.9-rc3/ghmm/root_finder.c
ghmm-0.9-rc3/ghmm/reestimate.h
ghmm-0.9-rc3/tests/coin_toss_test.c
ghmm-0.9-rc3/ghmmwrapper/ghmm.py
ghmm-0.9-rc3/ghmmwrapper/ghmmhelper.py
ghmm-0.9-rc3/ghmm/reestimate.c
ghmm-0.9-rc3/tests/data/test.smo
ghmm-0.9-rc3/ghmmwrapper/testdata/xml_cont_multiple.xml
ghmm-