hmmer-2.2g/
hmmer-2.2g/00README
hmmer-2.2g/config.guess
hmmer-2.2g/config.sub
hmmer-2.2g/configure
hmmer-2.2g/COPYRIGHT
hmmer-2.2g/documentation/
hmmer-2.2g/documentation/man/
hmmer-2.2g/documentation/man/hmmalign.man
hmmer-2.2g/documentation/man/hmmbuild.man
hmmer-2.2g/documentation/man/hmmcalibrate.man
hmmer-2.2g/documentation/man/hmmconvert.man
hmmer-2.2g/documentation/man/hmmemit.man
hmmer-2.2g/documentation/man/hmmer.man
hmmer-2.2g/documentation/man/hmmfetch.man
hmmer-2.2g/documentation/man/hmmindex.man
hmmer-2.2g/documentation/man/hmmpfam.man
hmmer-2.2g/documentation/man/hmmsearch.man
hmmer-2.2g/INSTALL
hmmer-2.2g/install-sh
hmmer-2.2g/LICENSE
hmmer-2.2g/Makefile.in
hmmer-2.2g/NOTES
hmmer-2.2g/squid/
hmmer-2.2g/squid/00README
hmmer-2.2g/squid/a2m.c
hmmer-2.2g/squid/afetch_main.c
hmmer-2.2g/squid/aligneval.c
hmmer-2.2g/squid/alignio.c
hmmer-2.2g/squid/alistat_main.c
hmmer-2.2g/squid/clustal.c
hmmer-2.2g/squid/cluster.c
hmmer-2.2g/squid/compalign_main.c
hmmer-2.2g/squid/compstruct_main.c
hmmer-2.2g/squid/configure
hmmer-2.2g/squid/dayhoff.c
hmmer-2.2g/squid/Docs/
hmmer-2.2g/squid/Docs/abstract.tex
hmmer-2.2g/squid/Docs/formats.tex
hmmer-2.2g/squid/Docs/gsi-format.tex
hmmer-2.2g/squid/Docs/intro.tex
hmmer-2.2g/squid/Docs/main.tex
hmmer-2.2g/squid/Docs/selex.tex
hmmer-2.2g/squid/Docs/squid-format.tex
hmmer-2.2g/squid/Docs/ssi-format.tex
hmmer-2.2g/squid/eps.c
hmmer-2.2g/squid/file.c
hmmer-2.2g/squid/Formats/
hmmer-2.2g/squid/Formats/a2m
hmmer-2.2g/squid/Formats/clustal
hmmer-2.2g/squid/Formats/embl
hmmer-2.2g/squid/Formats/fasta
hmmer-2.2g/squid/Formats/formattest.pl
hmmer-2.2g/squid/Formats/gcg
hmmer-2.2g/squid/Formats/gcgdata.1
hmmer-2.2g/squid/Formats/gcgdata.2
hmmer-2.2g/squid/Formats/genbank
hmmer-2.2g/squid/Formats/msf
hmmer-2.2g/squid/Formats/phylip
hmmer-2.2g/squid/Formats/pir
hmmer-2.2g/squid/Formats/regression.dat
hmmer-2.2g/squid/Formats/selex.1
hmmer-2.2g/squid/Formats/selex.2
hmmer-2.2g/squid/Formats/stockholm.1
hmmer-2.2g/squid/Formats/stockholm.2
hmmer-2.2g/squid/Formats/swissprot
hmmer-2.2g/squid/getopt.c
hmmer-2.2g/squid/gki.c
hmmer-2.2g/squid/gki.h
hmmer-2.2g/squid/gsi.c
hmmer-2.2g/squid/gsi.h
hmmer-2.2g/squid/gsi64.c
hmmer-2.2g/squid/gsi64.h
hmmer-2.2g/squid/hsregex.c
hmmer-2.2g/squid/INSTALL
hmmer-2.2g/squid/install-sh
hmmer-2.2g/squid/iupac.c
hmmer-2.2g/squid/Makefile.in
hmmer-2.2g/squid/Man/
hmmer-2.2g/squid/Man/afetch.man
hmmer-2.2g/squid/Man/alistat.man
hmmer-2.2g/squid/Man/seqstat.man
hmmer-2.2g/squid/Man/sfetch.man
hmmer-2.2g/squid/Man/shuffle.man
hmmer-2.2g/squid/Man/sreformat.man
hmmer-2.2g/squid/msa.c
hmmer-2.2g/squid/msa.h
hmmer-2.2g/squid/msf.c
hmmer-2.2g/squid/phylip.c
hmmer-2.2g/squid/revcomp.c
hmmer-2.2g/squid/revcomp_main.c
hmmer-2.2g/squid/rk.c
hmmer-2.2g/squid/rk.h
hmmer-2.2g/squid/selex.c
hmmer-2.2g/squid/seqencode.c
hmmer-2.2g/squid/seqsplit_main.c
hmmer-2.2g/squid/seqstat_main.c
hmmer-2.2g/squid/sfetch_main.c
hmmer-2.2g/squid/shuffle.c
hmmer-2.2g/squid/shuffle_main.c
hmmer-2.2g/squid/sindex_main.c
hmmer-2.2g/squid/sqerror.c
hmmer-2.2g/squid/sqfuncs.h
hmmer-2.2g/squid/sqio.c
hmmer-2.2g/squid/squid.h.in
hmmer-2.2g/squid/squidconf.h.in
hmmer-2.2g/squid/squidcore.c
hmmer-2.2g/squid/sreformat_main.c
hmmer-2.2g/squid/sre_ctype.c
hmmer-2.2g/squid/sre_math.c
hmmer-2.2g/squid/sre_string.c
hmmer-2.2g/squid/ssi.c
hmmer-2.2g/squid/ssi.h
hmmer-2.2g/squid/stack.c
hmmer-2.2g/squid/stockholm.c
hmmer-2.2g/squid/stockholm.h
hmmer-2.2g/squid/stopwatch.c
hmmer-2.2g/squid/stopwatch.h
hmmer-2.2g/squid/test_main.c
hmmer-2.2g/squid/translate.c
hmmer-2.2g/squid/translate_main.c
hmmer-2.2g/squid/types.c
hmmer-2.2g/squid/weight.c
hmmer-2.2g/squid/weight_main.c
hmmer-2.2g/src/
hmmer-2.2g/src/alphabet.c
hmmer-2.2g/src/camJul97.c
hmmer-2.2g/src/config.h
hmmer-2.2g/src/core_algorithms.c
hmmer-2.2g/src/debug.c
hmmer-2.2g/src/display.c
hmmer-2.2g/src/emit.c
hmmer-2.2g/src/emulation.c
hmmer-2.2g/src/funcs.h
hmmer-2.2g/src/globals.h
hmmer-2.2g/src/histogram.c
hmmer-2.2g/src/hmmalign.c
hmmer-2.2g/src/hmmbuild.c
hmmer-2.2g/src/hmmcalibrate-pvm.c
hmmer-2.2g/src/hmmcalibrate.c
hmmer-2.2g/src/hmmconvert.c
hmmer-2.2g/src/hmmemit.c
hmmer-2.2g/src/hmmfetch.c
hmmer-2.2g/src/hmmindex.c
hmmer-2.2g/src/hmmio.c
hmmer-2.2g/src/hmmpfam-pvm.c
hmmer-2.2g/src/hmmpfam.c
hmmer-2.2g/src/hmmpostal.c
hmmer-2.2g/src/hmmsearch-pvm.c
hmmer-2.2g/src/hmmsearch.c
hmmer-2.2g/src/Makefile.in
hmmer-2.2g/src/masks.c
hmmer-2.2g/src/mathsupport.c
hmmer-2.2g/src/misc.c
hmmer-2.2g/src/modelmakers.c
hmmer-2.2g/src/plan7.c
hmmer-2.2g/src/plan9.c
hmmer-2.2g/src/postprob.c
hmmer-2.2g/src/postprob.h
hmmer-2.2g/src/prior.c
hmmer-2.2g/src/pvm.c
hmmer-2.2g/src/states.c
hmmer-2.2g/src/structs.h
hmmer-2.2g/src/threads.c
hmmer-2.2g/src/tophits.c
hmmer-2.2g/src/trace.c
hmmer-2.2g/src/version.h
hmmer-2.2g/src/weetest.c
hmmer-2.2g/testsuite/
hmmer-2.2g/testsuite/alignalign_test.c
hmmer-2.2g/testsuite/evd_test.c
hmmer-2.2g/testsuite/Exercises.sh
hmmer-2.2g/testsuite/fitting_test.c
hmmer-2.2g/testsuite/fn3-bin
hmmer-2.2g/testsuite/fn3-bin-swap
hmmer-2.2g/testsuite/fn3.hmm
hmmer-2.2g/testsuite/fn3.seed
hmmer-2.2g/testsuite/Makefile.in
hmmer-2.2g/testsuite/masks_test.c
hm