AIR Tools is a MATLAB software package for tomographic reconstruction (and other imaging problems) consisting of a number of algebraic iterative reconstruction methods. The work was carried out as part of the project CSI: Computational Science in Ima

Steps: 1) Select a cropped region to set segmentation parameters 2) Do a pre-processing step on the cropped region 3) Compute the axon segmentation on the cropped region 4) Perform an axon discrimination to get rid of false positives 5) Perform the m