ChromSDE_program2.2/program/ChromSDE.m
ChromSDE_program2.2/program/ChromSDE_knownAlpha.m
ChromSDE_program2.2/program/ChromSDE_single.m
ChromSDE_program2.2/program/data/mESC_Hind3_1000000.cbins
ChromSDE_program2.2/program/data/mESC_Hind3_1000000.n_contact
ChromSDE_program2.2/program/data/mESC_Hind3_40000_chr13.cbins
ChromSDE_program2.2/program/data/mESC_Hind3_40000_chr13.n_contact
ChromSDE_program2.2/program/data/mESC_Ncol_1000000.cbins
ChromSDE_program2.2/program/data/mESC_Ncol_1000000.n_contact
ChromSDE_program2.2/program/FitFreq.m
ChromSDE_program2.2/program/FreqMat_Helix.fig
ChromSDE_program2.2/program/FreqMat_Helix.png
ChromSDE_program2.2/program/FreqMat_Helix.pos
ChromSDE_program2.2/program/FreqMat_Helix.pos.pdb
ChromSDE_program2.2/program/FreqMat_Helix.stat.txt
ChromSDE_program2.2/program/geom/alignatoms.m
ChromSDE_program2.2/program/geom/computermsd.m
ChromSDE_program2.2/program/geom/computeseparation.m
ChromSDE_program2.2/program/geom/etc/centeratoriginold.m
ChromSDE_program2.2/program/geom/etc/computecentroid.m
ChromSDE_program2.2/program/geom/etc/isomatfrom.m
ChromSDE_program2.2/program/geom/etc/isomatto.m
ChromSDE_program2.2/program/geom/etc/orthogonalprocrustes.m
ChromSDE_program2.2/program/geom/etc/rotateold.m
ChromSDE_program2.2/program/geom/etc/rotmatfrom.m
ChromSDE_program2.2/program/geom/etc/rotmatto.m
ChromSDE_program2.2/program/geom/etc/translateold.m
ChromSDE_program2.2/program/geom/procrustes.m
ChromSDE_program2.2/program/geom/transform.m
ChromSDE_program2.2/program/GNU_General_Public_License_v2
ChromSDE_program2.2/program/helixdata.m
ChromSDE_program2.2/program/helperfunctions/addchv.c
ChromSDE_program2.2/program/helperfunctions/addchv.mexmaci64
ChromSDE_program2.2/program/helperfunctions/addchv.mexw64
ChromSDE_program2.2/program/helperfunctions/center.m
ChromSDE_program2.2/program/helperfunctions/connectedG.asv
ChromSDE_program2.2/program/helperfunctions/connectedG.m
ChromSDE_program2.2/program/helperfunctions/dissimilar.m
ChromSDE_program2.2/program/helperfunctions/distance.m
ChromSDE_program2.2/program/helperfunctions/extractpars.m
ChromSDE_program2.2/program/helperfunctions/mexall.m
ChromSDE_program2.2/program/helperfunctions/mink.c
ChromSDE_program2.2/program/helperfunctions/mink.m
ChromSDE_program2.2/program/helperfunctions/mink.mexmaci64
ChromSDE_program2.2/program/helperfunctions/mink.mexw64
ChromSDE_program2.2/program/helperfunctions/pca.m
ChromSDE_program2.2/program/helperfunctions/progressbar.m
ChromSDE_program2.2/program/helperfunctions/scat.m
ChromSDE_program2.2/program/linear_SDP.m
ChromSDE_program2.2/program/matCorr.m
ChromSDE_program2.2/program/normFreqMat.fig
ChromSDE_program2.2/program/normFreqMat.png
ChromSDE_program2.2/program/normFreqMat.pos
ChromSDE_program2.2/program/normFreqMat.pos.pdb
ChromSDE_program2.2/program/normFreqMat.stat.txt
ChromSDE_program2.2/program/pos2pdb.m
ChromSDE_program2.2/program/PPA_Semismooth_new/Installmex.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/Atyfun.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/Atyfunsym.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/AXfun.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/AXfunsym.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/blktrace.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/cholAAt.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/diagapprox.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/diagapproxsym.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/findstep.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/findstepsym.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/invmatvecfun.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/linsysolvefun.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/matvec.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/matvecAAt.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/matvecAAtsym.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/matvecsym.m
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexAV2.c
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexAV2.mexa64
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexAV2.mexglx
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexAV2.mexw32
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexAV2.mexw64
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexAV2win.c
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexbwsolve.c
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexbwsolve.mexa64
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexbwsolve.mexglx
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexbwsolve.mexw32
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexbwsolve.mexw64
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexeig.c
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexeig.mexa64
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexeig.mexglx
ChromSDE_program2.2/program/PPA_Semismooth_new/solver/mexfun/mexeig.mexw32
ChromS