mpa_win/
mpa_win/mpa/
mpa_win/mpa/examples/
mpa_win/mpa/examples/fullyAutomatic/
mpa_win/mpa/examples/fullyAutomatic/n1.txt
mpa_win/mpa/examples/fullyAutomatic/n2.txt
mpa_win/mpa/examples/fullyAutomatic/p1.txt
mpa_win/mpa/examples/fullyAutomatic/p2n1.txt
mpa_win/mpa/examples/fullyAutomatic/p2n2.txt
mpa_win/mpa/examples/fullyAutomatic/p2p1.txt
mpa_win/mpa/examples/fullyAutomatic/p2p3.txt
mpa_win/mpa/examples/fullyAutomatic/p3.txt
mpa_win/mpa/examples/offset_3/
mpa_win/mpa/examples/offset_3.txt
mpa_win/mpa/examples/offset_3/Ctl.txt
mpa_win/mpa/examples/offset_3/Sel.txt
mpa_win/mpa/examples/pairwiseGuided/
mpa_win/mpa/examples/pairwiseGuided/p2_n1.txt
mpa_win/mpa/examples/pairwiseGuided/p2_n2.txt
mpa_win/mpa/examples/pairwiseGuided/p2_p1.txt
mpa_win/mpa/examples/pairwiseGuided/p2_p3.txt
mpa_win/mpa/lib/
mpa_win/mpa/lib/add.pl
mpa_win/mpa/lib/add_auto.pl
mpa_win/mpa/lib/gathering.pl
mpa_win/mpa/lib/gatheringAuto.pl
mpa_win/mpa/lib/njs.pl
mpa_win/mpa/lib/postprocessing.pl
mpa_win/mpa/lib/preProcessing.pl
mpa_win/mpa/lib/preProcessingAuto.pl
mpa_win/mpa/lib/psnw.pl
mpa_win/mpa/lib/readjustAli.pl
mpa_win/mpa/lib/refinement.pl
mpa_win/mpa/lib/wrapper.pl
mpa_win/mpa/mpa.pl
mpa_win/mpa_gui.pl