basic_demon_example.m
compile_c_files.m
functions\backwards2forwards.m
functions\backwards2forwards_2d_double.c
functions\backwards2forwards_2d_double.m
functions\backwards2forwards_3d_double.c
functions\backwards2forwards_3d_single.c
functions\demons_energy.m
functions\fminlbfgs.m
functions\imgaussian.m
functions\imresize3d.m
functions\MutualTransform.m
functions\mutual_histogram_double.c
functions\mutual_histogram_double.m
functions\mutual_histogram_single.c
functions\mutual_transform_2d_double.asv
functions\mutual_transform_2d_double.c
functions\mutual_transform_2d_double.m
functions\mutual_transform_3d_double.asv
functions\mutual_transform_3d_double.c
functions\mutual_transform_3d_single.asv
functions\mutual_transform_3d_single.c
functions\showcs3.fig
functions\showcs3.m
functions\store_transf.m
functions\strain.m
functions_affine\affine_error_3d_double.c
functions_affine\affine_error_3d_single.c
functions_affine\affine_registration_error.m
functions_affine\affine_registration_image.m
functions_affine\affine_transform.m
functions_affine\affine_transform_2d_double.c
functions_affine\affine_transform_2d_double.m
functions_affine\affine_transform_3d_double.c
functions_affine\affine_transform_3d_single.c
functions_affine\image_difference.m
functions_affine\image_interpolation.c
functions_affine\image_interpolation.h
functions_affine\make_transformation_matrix.m
functions_affine\squared_difference_double.c
functions_affine\squared_difference_double.m
functions_affine\squared_difference_single.c
functions_nonrigid\image_interpolation.c
functions_nonrigid\image_interpolation.h
functions_nonrigid\movepixels.m
functions_nonrigid\movepixels_2d_double.c
functions_nonrigid\movepixels_2d_double.m
functions_nonrigid\movepixels_3d_double.c
functions_nonrigid\movepixels_3d_single.c
images\brain_FA.png
images\brain_FLAIR.png
images\brain_MD.png
images\brain_T1.png
images\brain_T1_wave.png
images\brain_T2.png
images\brain_T2_wave.png
images\checkboard2.png
images\checkboard3.png
images\checkboard4.png
images\get_example_data.m
images\lenag1.png
images\lenag2.png
images\lenag3.png
images\modtest1.png
images\modtest2.png
images\modtest3.png
images\wave_field.mat
literature\Kroon_Paper_Boston.pdf
literature\Kroon_Poster_Boston.pdf
register_images.m
register_volumes.m
license.txt